About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2179149.1-
KAK2179150.1RGD1565685 PROTEIN
KAK2179151.1G PROTEIN PATHWAY SUPPRESSOR 2
KAK2179152.1STIMULATOR OF INTERFERON GENES PROTEIN
KAK2179153.1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4
KAK2179154.1-
KAK2179155.1FERM DOMAIN CONTAINING PROTEIN
KAK2179156.1FERM DOMAIN CONTAINING PROTEIN
KAK2179157.1EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED
KAK2179158.1-
KAK2179159.1EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED
KAK2179160.1G-PROTEIN COUPLED RECEPTOR
KAK2179161.1-
KAK2179135.1SERINE/THREONINE-PROTEIN KINASE
KAK2179136.1-
KAK2179137.1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
KAK2179138.1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
KAK2179139.1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
KAK2179140.1NEUROTRANSMITTER GATED ION CHANNEL
KAK2179141.1NEUROTRANSMITTER GATED ION CHANNEL
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