About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2179611.1GTP-BINDING PROTEIN-RELATED
KAK2179612.1MOLTING PROTEIN MLT-4
KAK2179613.1MYOSIN LIGHT CHAIN 1, 3
KAK2179614.1FERREDOXIN-RELATED
KAK2179615.14-NITROPHENYLPHOSPHATASE-RELATED
KAK2179616.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2179617.1REVERSE TRANSCRIPTASES
KAK2179618.14-NITROPHENYLPHOSPHATASE-RELATED
KAK2179619.1CALPAIN
KAK2179620.1-
KAK2179621.1RHO GTPASE-ACTIVATING PROTEIN 100F
KAK2179622.1RHO GTPASE-ACTIVATING PROTEIN 100F
KAK2179575.1-
KAK2179576.1PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED
KAK2179577.1-
KAK2179578.1PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED
KAK2179579.1CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
KAK2179580.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
KAK2179581.1BA1-643
KAK2179582.1ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE
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