About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Key Reference Paper

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000014082.1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17
ENSZWYP00000014083.1TNF RECEPTOR ASSOCIATED FACTOR
ENSZWYP00000014084.1SOLUTE CARRIER FAMILY 39
ENSZWYP00000014085.1SOLEUCYL-TRNA SYNTHETASE
ENSZWYP00000014086.1COILED-COIL DOMAIN-CONTAINING PROTEIN 60
ENSZWYP00000014087.1PROTEIN SIDEKICK
ENSZWYP00000014088.1YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN
ENSZWYP00000014089.1CONDENSIN-2 COMPLEX SUBUNIT G2
ENSZWYP00000014090.1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17
ENSZWYP00000014091.1-
ENSZWYP00000014092.1HL01030P-RELATED
ENSZWYP00000014093.1HISTONE H3.2
ENSZWYP00000014094.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
ENSZWYP00000014095.1YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN
ENSZWYP00000014096.1-
ENSZWYP00000014097.1PROTEIN SIDEKICK
ENSZWYP00000014098.1SOLEUCYL-TRNA SYNTHETASE
ENSZWYP00000014099.1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
ENSZWYP00000014100.1GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE
ENSZWYP00000014101.1-
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