About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2180508.1RP42 RELATED
KAK2180509.1AMINE OXIDASE
KAK2180510.1ADP-RIBOSYLATION-LIKE FACTOR 6-INTERACTING PROTEIN
KAK2180511.1UBIQUITIN-CONJUGATING ENZYME E2
KAK2180512.1RNA AND EXPORT FACTOR BINDING PROTEIN
KAK2180513.1LP21163P
KAK2180514.1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
KAK2180515.1-
KAK2180466.1-
KAK2180467.1-
KAK2180468.1RGD1565685 PROTEIN
KAK2180469.1METHYLENETETRAHYDROFOLATE REDUCTASE
KAK2180470.1LD39211P
KAK2180471.1UNCHARACTERIZED
KAK2180472.1LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
KAK2180473.1-
KAK2180474.1RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE
KAK2180475.1WD40 REPEAT PROTEIN
KAK2180476.1RAS-RELATED PROTEIN RAB
KAK2180477.1OS07G0239500 PROTEIN
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