Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2156295.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| KAK2156249.1 | CHITIN SYNTHASE |
| KAK2156250.1 | |
| KAK2156251.1 | |
| KAK2156246.1 | |
| KAK2156247.1 | |
| KAK2156248.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2156245.1 | |
| KAK2156244.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| KAK2156219.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2156220.1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| KAK2156221.1 | TRANSMEMBRANE PROTEIN |
| KAK2156222.1 | |
| KAK2156223.1 | |
| KAK2156224.1 | |
| KAK2156217.1 | SORTING NEXIN |
| KAK2156218.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| KAK2156185.1 | |
| KAK2156186.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2156187.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2156188.1 | |
| KAK2156189.1 | |
| KAK2156184.1 | |
| KAK2156181.1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
| KAK2156182.1 | DOLICHYL GLYCOSYLTRANSFERASE |
| KAK2156183.1 | OSJNBA0004B13.7 PROTEIN |
| KAK2156137.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2156138.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2156135.1 | VACUOLAR ATP SYNTHASE SUBUNIT G |
| KAK2156136.1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
| KAK2156134.1 | |
| KAK2156129.1 | |
| KAK2156130.1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2156131.1 | |
| KAK2156132.1 | |
| KAK2156133.1 | |
| KAK2156101.1 | |
| KAK2156100.1 | PROTRUDIN |
| KAK2156099.1 | G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED |
| KAK2156067.1 | TGF-BETA FAMILY |
| KAK2156068.1 | |
| KAK2156060.1 | |
| KAK2156061.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2156062.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2156063.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2156064.1 | |
| KAK2156065.1 | |
| KAK2156066.1 | |
| KAK2156057.1 | |
| KAK2156058.1 |
