Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2158840.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| KAK2158841.1 | |
| KAK2158842.1 | LEUCINE ZIPPER PROTEIN 4-RELATED |
| KAK2158843.1 | - |
| KAK2158844.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| KAK2158845.1 | |
| KAK2158846.1 | |
| KAK2158847.1 | |
| KAK2158834.1 | |
| KAK2158835.1 | |
| KAK2158836.1 | |
| KAK2158837.1 | |
| KAK2158809.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| KAK2158810.1 | D-DOPACHROME DECARBOXYLASE |
| KAK2158811.1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| KAK2158812.1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| KAK2158806.1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| KAK2158807.1 | - |
| KAK2158808.1 | |
| KAK2158802.1 | SPHINGOMYELINASE FAMILY MEMBER |
| KAK2158803.1 | RABIN3-RELATED |
| KAK2158804.1 | BLR2807 PROTEIN |
| KAK2158805.1 | PEPTIDASE M20 |
| KAK2158799.1 | |
| KAK2158800.1 | |
| KAK2158801.1 | |
| KAK2158737.1 | TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE |
| KAK2158738.1 | MUCIN 4-RELATED |
| KAK2158739.1 | MUCIN 4-RELATED |
| KAK2158733.1 | |
| KAK2158734.1 | |
| KAK2158735.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| KAK2158736.1 | |
| KAK2158730.1 | |
| KAK2158731.1 | |
| KAK2158732.1 | |
| KAK2158723.1 | |
| KAK2158724.1 | |
| KAK2158725.1 | |
| KAK2158726.1 | PLAT DOMAIN-CONTAINING PROTEIN |
| KAK2158727.1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| KAK2158728.1 | |
| KAK2158729.1 | |
| KAK2158722.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2158676.1 | OS10G0105400 PROTEIN |
| KAK2158677.1 | SPORE COAT PROTEIN SP85 |
| KAK2158678.1 | OS10G0105400 PROTEIN |
| KAK2158679.1 | |
| KAK2158680.1 | |
| KAK2158681.1 | OS10G0105400 PROTEIN |
