About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 516 517 518 519 520 521 522 523 524 525 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8007791.1LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC
CAI8007792.150S RIBOSOMAL PROTEIN L32
CAI8007793.1MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL
CAI8007794.1ACYL CARRIER PROTEIN
CAI8007795.1ACYL CARRIER PROTEIN
CAI8007796.1L-THREONINE 3-DEHYDROGENASE
CAI8007797.1POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN
CAI8007798.1ALANYL-TRNA SYNTHETASE
CAI8007799.1AMINOTRANSFERASE
CAI8007800.1BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
CAI8007801.1QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED
CAI8007802.12-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE
CAI8007803.1TRANSMEMBRANE PROTEIN 256
CAI8007804.1ANTITOXIN HIGA-1
CAI8007805.1TRANSAMIDASE
CAI8007806.1ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT
CAI8007807.1FAD-BINDING PROTEIN
CAI8007808.1-
CAI8007809.1METHYLTRANSFERASE
CAI8007810.1ADENYLOSUCCINATE LYASE
TOP