About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2184042.1MYOSIN
KAK2184043.1MYOSIN
KAK2184044.1DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
KAK2184045.1SMALL NUCLEAR RIBONUCLEOPROTEIN
KAK2184046.1SIGNAL PEPTIDE PEPTIDASE
KAK2184047.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
KAK2184003.1MEMBRANE-ANCHORED JUNCTION PROTEIN MAJIN
KAK2184004.1-
KAK2184005.1ZINC FINGER PROTEIN
KAK2184006.16-PHOSPHOGLUCONATE DEHYDROGENASE
KAK2184007.1POLYCOMB GROUP PROTEIN
KAK2184008.1GLR0591 PROTEIN
KAK2184009.1TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED
KAK2184010.1PROTEIN PHOSPHATASE
KAK2184011.1COPINE
KAK2184012.1GEO11419P1
KAK2184013.1GEO11419P1
KAK2184014.1GEO11419P1
KAK2184015.1COPINE
KAK2184016.1PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
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