About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG00169.3
RPACG00170.1TRANSMEMBRANE PROTEIN 107
RPACG00171.1
RPACG00172.1
RPACG00173.1
RPACG00174.1
RPACG00175.1
RPACG00176.1
RPACG00177.1
RPACG00178.1
RPACG00179.1
RPACG00180.1
RPACG00180.2
RPACG00181.1
RPACG00182.1
RPACG00183.1
RPACG00184.1
RPACG00185.1
RPACG00186.1
RPACG00187.1
RPACG00188.1
RPACG00189.1
RPACG00190.1
RPACG00191.1AMINOTRANSFERASE CLASS V
RPACG00192.1CARBOHYDRATE SULFOTRANSFERASE
RPACG00192.2
RPACG00193.1CELL DIVISION PROTEIN KINASE
RPACG00194.1CAVEOLIN
RPACG00195.1ACID PHOSPHATASE-RELATED
RPACG00196.1MITOCHONDRIAL CARRIER PROTEIN RIM2
RPACG00197.1
RPACG00198.1CRUMBS FAMILY MEMBER
RPACG00199.1NOTCH LIGAND FAMILY MEMBER
RPACG00200.1
RPACG00201.1
RPACG00202.1
RPACG00202.2
RPACG00203.1
RPACG00204.1
RPACG00205.1
RPACG00206.1
RPACG00207.1ATP-DEPENDENT RNA HELICASE
RPACG00208.1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
RPACG00209.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
RPACG00209.2
RPACG00210.1PSEUDOURIDYLATE SYNTHASE
RPACG00211.1PROTEIN RER1
RPACG00212.1DDB1- AND CUL4-ASSOCIATED FACTOR 17
RPACG00213.1PROTEIN EVA-1
RPACG00214.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
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