About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8007131.1RNA POLYMERASE SIGMA FACTOR RPO
CAI8007136.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8007134.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8007133.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8007132.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8007135.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8007137.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8007138.1UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED
CAI8007139.1CELL CYCLE PROTEIN
CAI8007140.1UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
CAI8007141.1PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE
CAI8007142.1UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
CAI8007143.1MUR LIGASE FAMILY MEMBER
CAI8007144.1PEPTIDOGLYCAN D,D-TRANSPEPTIDASE
CAI8007149.1S-ADENOSYL-METHYLTRANSFERASE MRAW
CAI8007148.1S-ADENOSYL-METHYLTRANSFERASE MRAW
CAI8007147.1S-ADENOSYL-METHYLTRANSFERASE MRAW
CAI8007146.1S-ADENOSYL-METHYLTRANSFERASE MRAW
CAI8007145.1S-ADENOSYL-METHYLTRANSFERASE MRAW
CAI8007150.1-
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