Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2169950.1 | REVERSE TRANSCRIPTASES |
| KAK2169951.1 | |
| KAK2169952.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| KAK2169953.1 | MYELIN PROTEOLIPID |
| KAK2169938.1 | |
| KAK2169939.1 | LEYDIG CELL TUMOR 10 KDA PROTEIN HOMOLOG |
| KAK2169940.1 | SARM1 |
| KAK2169941.1 | SARM1 |
| KAK2169942.1 | |
| KAK2169943.1 | RAS-RELATED PROTEIN RAB |
| KAK2169944.1 | PROTEIN ABHD11 |
| KAK2169945.1 | |
| KAK2169935.1 | |
| KAK2169936.1 | CONTACTIN 5 |
| KAK2169937.1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| KAK2169923.1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| KAK2169924.1 | 5'-NUCLEOTIDASE-RELATED |
| KAK2169925.1 | 5'-NUCLEOTIDASE-RELATED |
| KAK2169926.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2169927.1 | |
| KAK2169928.1 | |
| KAK2169929.1 | KELCH PROTEIN |
| KAK2169930.1 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
| KAK2169931.1 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
| KAK2169932.1 | |
| KAK2169933.1 | RAS-LIKE FAMILY MEMBER 11 |
| KAK2169934.1 | SIALATE O-ACETYLESTERASE |
| KAK2169830.1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
| KAK2169831.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2169832.1 | |
| KAK2169833.1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| KAK2169834.1 | ANKYRIN REPEAT DOMAIN 40 |
| KAK2169835.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2169836.1 | PITUITARY HOMEOBOX HOMOLOG PTX1 |
| KAK2169837.1 | |
| KAK2169838.1 | |
| KAK2169839.1 | |
| KAK2169826.1 | |
| KAK2169827.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 99 |
| KAK2169828.1 | N-MYC DOWNSTREAM REGULATED |
| KAK2169829.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| KAK2169815.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| KAK2169816.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| KAK2169817.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| KAK2169818.1 | |
| KAK2169819.1 | NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 |
| KAK2169820.1 | NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 |
| KAK2169821.1 | |
| KAK2169822.1 | |
| KAK2169823.1 |
