Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2173658.1 | |
| KAK2173635.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173636.1 | ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED |
| KAK2173637.1 | CADHERIN-87A |
| KAK2173638.1 | |
| KAK2173639.1 | |
| KAK2173640.1 | CADHERIN-23 |
| KAK2173641.1 | |
| KAK2173642.1 | OS10G0105400 PROTEIN |
| KAK2173643.1 | OS10G0105400 PROTEIN |
| KAK2173644.1 | |
| KAK2173645.1 | STANNIOCALCIN |
| KAK2173646.1 | |
| KAK2173647.1 | |
| KAK2173648.1 | OS10G0105400 PROTEIN |
| KAK2173625.1 | |
| KAK2173626.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11 |
| KAK2173627.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| KAK2173628.1 | |
| KAK2173629.1 | FI17866P1 |
| KAK2173630.1 | FI17866P1 |
| KAK2173631.1 | |
| KAK2173632.1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
| KAK2173633.1 | EH DOMAIN |
| KAK2173634.1 | |
| KAK2173621.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| KAK2173622.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| KAK2173623.1 | RGD1565685 PROTEIN |
| KAK2173624.1 | |
| KAK2173610.1 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
| KAK2173611.1 | THREONINE-TRNA LIGASE |
| KAK2173612.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| KAK2173613.1 | MORTALITY FACTOR 4-LIKE PROTEIN |
| KAK2173614.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT A CAF-1 SUBUNIT A |
| KAK2173615.1 | SH3 DOMAIN-CONTAINING |
| KAK2173616.1 | |
| KAK2173617.1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
| KAK2173618.1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| KAK2173619.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| KAK2173620.1 | CARBOHYDRATE SULFOTRANSFERASE |
| KAK2173588.1 | KELCH PROTEIN |
| KAK2173589.1 | TETRASPANIN |
| KAK2173590.1 | TETRASPANIN |
| KAK2173591.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| KAK2173592.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| KAK2173593.1 | |
| KAK2173594.1 | |
| KAK2173595.1 | |
| KAK2173596.1 | UDP/ADP-SUGAR PYROPHOSPHATASE |
| KAK2173597.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
