About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8005591.1-
CAI8005590.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
CAI8005589.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
CAI8005594.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
CAI8005595.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
CAI8005597.1ENDORIBONUCLEASE LACTB2
CAI8005596.1ENDORIBONUCLEASE LACTB2
CAI8005598.1ENDORIBONUCLEASE LACTB2
CAI8005600.1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
CAI8005601.1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
CAI8005599.1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
CAI8005602.1VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE
CAI8005603.1VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE
CAI8005604.1RAD52 MOTIF-CONTAINING PROTEIN 1
CAI8005606.1-
CAI8005605.1MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER
CAI8005608.1MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED
CAI8005607.1MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED
CAI8005609.1-
CAI8005610.1UNCHARACTERIZED
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