Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2175386.1 | CUBILIN-LIKE PROTEIN |
| KAK2175387.1 | |
| KAK2175388.1 | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT |
| KAK2175389.1 | |
| KAK2175390.1 | |
| KAK2175391.1 | ESTERASE OVCA2 |
| KAK2175392.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| KAK2175393.1 | PROLINE IMINOPEPTIDASE |
| KAK2175394.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2175395.1 | WD40 REPEAT DOMAIN 95 |
| KAK2175396.1 | |
| KAK2175397.1 | WD40 REPEAT DOMAIN 95 |
| KAK2175398.1 | WD40 REPEAT DOMAIN 95 |
| KAK2175399.1 | |
| KAK2175400.1 | DYNAMIN |
| KAK2175362.1 | |
| KAK2175363.1 | |
| KAK2175364.1 | |
| KAK2175365.1 | |
| KAK2175366.1 | |
| KAK2175367.1 | OPSIN |
| KAK2175368.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2175369.1 | UNCHARACTERIZED |
| KAK2175370.1 | BUCENTAUR RELATED |
| KAK2175371.1 | REVERSE TRANSCRIPTASES |
| KAK2175372.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2175373.1 | REVERSE TRANSCRIPTASES |
| KAK2175374.1 | AQUAPORIN TRANSPORTER |
| KAK2175375.1 | AQUAPORIN TRANSPORTER |
| KAK2175376.1 | AQUAPORIN TRANSPORTER |
| KAK2175377.1 | |
| KAK2175378.1 | COLLAGEN ALPHA |
| KAK2175379.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| KAK2175380.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 32 |
| KAK2175381.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| KAK2175382.1 | - |
| KAK2175383.1 | PROTEIN DISPATCHED-RELATED |
| KAK2175342.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2175343.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| KAK2175344.1 | TRANSMEMBRANE GTPASE FZO1 |
| KAK2175345.1 | |
| KAK2175346.1 | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE |
| KAK2175347.1 | JITTERBUG, ISOFORM N |
| KAK2175348.1 | |
| KAK2175349.1 | - |
| KAK2175350.1 | |
| KAK2175351.1 | DELTEX-RELATED |
| KAK2175352.1 | COILED-COIL DOMAIN-CONTAINING 74A |
| KAK2175353.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5 |
| KAK2175354.1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
