Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2175737.1 | CALCIUM BINDING PROTEINS |
| KAK2175738.1 | |
| KAK2175739.1 | |
| KAK2175740.1 | |
| KAK2175741.1 | |
| KAK2175742.1 | |
| KAK2175743.1 | RGPR-RELATED |
| KAK2175744.1 | RGPR-RELATED |
| KAK2175745.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2175746.1 | |
| KAK2175747.1 | GAMMA-SECRETASE SUBUNIT PEN-2 |
| KAK2175748.1 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT |
| KAK2175749.1 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT |
| KAK2175750.1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| KAK2175751.1 | CENTROSOMAL PROTEIN OF 19K CEP19 |
| KAK2175752.1 | VESICLE-TRAFFICKING PROTEIN SEC22B |
| KAK2175753.1 | RRNA METHYLTRANSFERASE 3, |
| KAK2175754.1 | LAMIN DM0-RELATED |
| KAK2175755.1 | |
| KAK2175715.1 | |
| KAK2175716.1 | |
| KAK2175717.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 |
| KAK2175718.1 | CALCIUM-BINDING PROTEIN 39-RELATED |
| KAK2175719.1 | |
| KAK2175720.1 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| KAK2175721.1 | |
| KAK2175722.1 | MEIOSIS 1 ARREST PROTEIN |
| KAK2175723.1 | UNCHARACTERIZED |
| KAK2175724.1 | |
| KAK2175725.1 | PATCHED-RELATED |
| KAK2175726.1 | |
| KAK2175727.1 | |
| KAK2175728.1 | |
| KAK2175729.1 | |
| KAK2175690.1 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
| KAK2175691.1 | |
| KAK2175692.1 | ZGC:194242 |
| KAK2175693.1 | |
| KAK2175694.1 | UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED |
| KAK2175695.1 | |
| KAK2175696.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| KAK2175697.1 | - |
| KAK2175698.1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| KAK2175699.1 | |
| KAK2175700.1 | UNCHARACTERIZED |
| KAK2175701.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 117 |
| KAK2175702.1 | MORN REPEAT-CONTAINING PROTEIN 3 |
| KAK2175703.1 | |
| KAK2175704.1 | |
| KAK2175705.1 | RE45066P-RELATED |
