About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8003816.1HEME-DEPENDENT PEROXIDASE YWFI-RELATED
CAI8003818.1-
CAI8003820.1PEPTIDASE S9 PROLYL OLIGOPEPTIDASE
CAI8003822.1DNA-3-METHYLADENINE GLYCOSYLASE 1
CAI8003824.1BLR3401 PROTEIN
CAI8003826.1POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030)
CAI8003836.1DNA REPAIR PROTEIN RECN
CAI8003840.1SHIKIMATE DEHYDROGENASE
CAI8003838.1SHIKIMATE DEHYDROGENASE
CAI8003844.1SHIKIMATE DEHYDROGENASE
CAI8003842.1SHIKIMATE DEHYDROGENASE
CAI8003846.1-
CAI8003848.1IDURONATE 2-SULFATASE
CAI8003850.1NAD-DEPENDENT ALCOHOL DEHYDROGENASE
CAI8003852.1SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA
CAI8003856.1DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER
CAI8003858.1DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER
CAI8003854.1DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER
CAI8003860.1SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA
CAI8003862.1HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE
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