About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8003275.1POLYKETIDE SYNTHASE-RELATED
CAI8003273.1POLYKETIDE SYNTHASE-RELATED
CAI8003287.1FOLYLPOLYGLUTAMATE SYNTHASE-RELATED
CAI8003289.1NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
CAI8003291.14-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED
CAI8003293.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8003295.1ENOYL-COA HYDRATASE-RELATED
CAI8003297.13-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED
CAI8003303.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8003305.1CYTOKINE RECEPTOR
CAI8003309.1CYTOKINE RECEPTOR
CAI8003307.1CYTOKINE RECEPTOR
CAI8003311.1CYTOKINE RECEPTOR
CAI8003313.1-
CAI8003315.1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
CAI8003317.1MUSCLEBLIND-LIKE PROTEIN
CAI8003319.1MUSCLEBLIND-LIKE PROTEIN
CAI8003321.1MUSCLEBLIND-LIKE PROTEIN
CAI8003325.1SLL1037 PROTEIN
CAI8003327.1AMINOPEPTIDASE
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