About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8057791.1NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
CAI8057792.1NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
CAI8057793.1NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
CAI8057794.1RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT
CAI8057797.1RAB GDP/GTP EXCHANGE FACTOR
CAI8057796.1RAB GDP/GTP EXCHANGE FACTOR
CAI8057795.1RAB GDP/GTP EXCHANGE FACTOR
CAI8057799.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8057800.1TRANSPORT ATP-BINDING PROTEIN
CAI8057801.1TRANSPORT ATP-BINDING PROTEIN
CAI8057798.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8057802.1TRANSPORT ATP-BINDING PROTEIN
CAI8057803.1GLYOXALASE FAMILY PROTEIN
CAI8057804.1-
CAI8057807.1HISTONE DEACETYLASE HDAC1-RELATED
CAI8057806.1HISTONE DEACETYLASE 2-RELATED
CAI8057805.1-
CAI8057809.1HISTONE DEACETYLASE HDAC1-RELATED
CAI8057808.1HISTONE DEACETYLASE 2-RELATED
CAI8057810.1DNA POLYMERASE EPSILON SUBUNIT B
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