About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2973 2974 2975 2976 2977 2978 2979 2980 2981 2982 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8056931.15-OXOPROLINASE RELATED
CAI8056932.15-OXOPROLINASE RELATED
CAI8056933.1-
CAI8056934.1F420H(2)-DEPENDENT QUINONE REDUCTASE RV1261C
CAI8056935.15-OXOPROLINASE RELATED
CAI8056936.1-
CAI8056937.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
CAI8056938.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
CAI8056939.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
CAI8056940.1HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
CAI8056941.1CELL SURFACE PROTEIN
CAI8056942.1DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED
CAI8056945.1LEUCINE DEHYDROGENASE
CAI8056944.1LEUCINE DEHYDROGENASE
CAI8056943.1LEUCINE DEHYDROGENASE
CAI8056946.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8056947.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8056948.1-
CAI8056949.1SINGLE-STRANDED DNA-BINDING PROTEIN
CAI8056950.130S RIBOSOMAL PROTEIN S18
TOP