About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2899 2900 2901 2902 2903 2904 2905 2906 2907 2908 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8055451.1CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED
CAI8055452.1CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED
CAI8055453.1EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN
CAI8055454.1STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
CAI8055457.1UBIQUILIN
CAI8055456.1UBIQUILIN
CAI8055455.1UBIQUILIN
CAI8055458.1UBIQUILIN
CAI8055459.1UBIQUILIN
CAI8055460.1UBIQUILIN
CAI8055461.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8055462.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8055463.1C2 DOMAIN-CONTAINING PROTEIN
CAI8055464.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
CAI8055465.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
CAI8055466.1DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN
CAI8055468.1MICROTUBULE ASSOCIATED PROTEIN XMAP215
CAI8055467.1MICROTUBULE ASSOCIATED PROTEIN XMAP215
CAI8055469.1-
CAI8055470.1NURIM
TOP