About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8054630.1LYSYL-TRNA SYNTHETASE
CAI8054632.1LYSYL-TRNA SYNTHETASE
CAI8054633.1LYSYL-TRNA SYNTHETASE
CAI8054634.1LYSYL-TRNA SYNTHETASE
CAI8054635.1SERYL-TRNA SYNTHETASE
CAI8054636.1STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
CAI8054638.1RIBOSOMAL PROTEIN S9
CAI8054637.1RIBOSOMAL PROTEIN S9
CAI8054639.1-
CAI8054640.130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18
CAI8054641.1METHIONINE AMINOPEPTIDASE
CAI8054642.1NUCLEOTIDE KINASE
CAI8054643.1SECY/SEC61-ALPHA FAMILY MEMBER
CAI8054644.150S RIBOSOMAL PROTEIN L15
CAI8054647.1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
CAI8054646.1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
CAI8054645.1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
CAI8054649.139S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL
CAI8054648.139S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL
CAI8054650.140S RIBOSOMAL PROTEIN S15A
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