About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8050831.1SERINE HYDROXYMETHYLTRANSFERASE
CAI8050832.1DNA POLYMERASE II LARGE SUBUNIT
CAI8050833.1IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H
CAI8050834.1CELL DIVISION CONTROL PROTEIN 6-RELATED
CAI8050836.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8050835.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8050838.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8050837.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
CAI8050839.1AAA-FAMILY ATPASE
CAI8050840.1FERRITIN
CAI8050841.1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
CAI8050842.1ASPARTATE KINASE
CAI8050843.1PROLIFERATING CELL NUCLEAR ANTIGEN
CAI8050844.1-
CAI8050845.1PHOSPHATIDYLINOSITOL PHOSPHATASE
CAI8050846.1PYRUVATE FORMATE-LYASE-ACTIVATING ENZYME
CAI8050847.14-PHOSPHOPANTOATE--BETA-ALANINE LIGASE
CAI8050848.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
CAI8050849.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
CAI8050850.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
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