About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2600 2601 2602 2603 2604 2605 2606 2607 2608 2609 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8049470.1PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ
CAI8049471.1PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ
CAI8049473.1ADENYLOSUCCINATE SYNTHETASE
CAI8049474.1DIHYDRODIPICOLINATE SYNTHASE
CAI8049475.1DEHYDROGENASE, PUTATIVE-RELATED
CAI8049476.1DIHYDRODIPICOLINATE REDUCTASE
CAI8049478.1POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
CAI8049477.1POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
CAI8049479.1RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR
CAI8049481.1COATOMER SUBUNIT DELTA
CAI8049480.1COATOMER SUBUNIT DELTA
CAI8049482.1COATOMER SUBUNIT DELTA
CAI8049483.1-
CAI8049484.1-
CAI8049485.1-
CAI8049486.1-
CAI8049488.1TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
CAI8049487.1TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
CAI8049489.1TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
CAI8049490.1RIBONUCLEASE
TOP