About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8049228.1TRANSLATIONAL ACTIVATOR GCN1-RELATED
CAI8049232.1TRANSLATIONAL ACTIVATOR GCN1-RELATED
CAI8049233.1TRANSLATIONAL ACTIVATOR GCN1-RELATED
CAI8049234.1TRANSLATIONAL ACTIVATOR GCN1-RELATED
CAI8049235.1TRANSLATIONAL ACTIVATOR GCN1-RELATED
CAI8049237.1PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
CAI8049236.1PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
CAI8049238.1PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
CAI8049239.1GMP SYNTHASE-RELATED
CAI8049240.1SUA5
CAI8049241.1PHOSPHOGLYCERATE KINASE
CAI8049242.1COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE
CAI8049244.1TRIOSEPHOSPHATE ISOMERASE
CAI8049243.1TRIOSEPHOSPHATE ISOMERASE
CAI8049245.1TRIOSEPHOSPHATE ISOMERASE
CAI8049246.1TRNA DIMETHYLALLYLTRANSFERASE
CAI8049249.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8049247.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8049248.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8049250.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
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