Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2181846.1 | LD44762P |
| KAK2181847.1 | |
| KAK2181848.1 | CYTOKINE RECEPTOR |
| KAK2181849.1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| KAK2181850.1 | UNCHARACTERIZED |
| KAK2181851.1 | UNCHARACTERIZED |
| KAK2181852.1 | SARCOGLYCAN |
| KAK2181853.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| KAK2181854.1 | |
| KAK2181820.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| KAK2181821.1 | |
| KAK2181822.1 | |
| KAK2181823.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| KAK2181824.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| KAK2181825.1 | CYTOKINE RECEPTOR |
| KAK2181826.1 | CYTOKINE RECEPTOR |
| KAK2181827.1 | UNCHARACTERIZED |
| KAK2181828.1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| KAK2181829.1 | CALPAIN |
| KAK2181830.1 | CALPAIN |
| KAK2181831.1 | |
| KAK2181832.1 | CHITINASE |
| KAK2181833.1 | |
| KAK2181834.1 | |
| KAK2181835.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 43 |
| KAK2181836.1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
| KAK2181837.1 | |
| KAK2181816.1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 |
| KAK2181817.1 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| KAK2181818.1 | |
| KAK2181819.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| KAK2181795.1 | |
| KAK2181796.1 | |
| KAK2181797.1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| KAK2181798.1 | GLUTAREDOXIN FAMILY MEMBER |
| KAK2181799.1 | ANKYRIN REPEAT PROTEIN |
| KAK2181800.1 | HEDGEHOG-INTERACTING PROTEIN |
| KAK2181801.1 | |
| KAK2181802.1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| KAK2181803.1 | ENOYL-COA HYDRATASE |
| KAK2181804.1 | DYNEIN REGULATORY COMPLEX PROTEIN 8 |
| KAK2181805.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER |
| KAK2181806.1 | |
| KAK2181807.1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| KAK2181808.1 | COILED-COIL DOMAIN-CONTAINING 166 |
| KAK2181809.1 | GLYCOSYLTRANSFERASE-RELATED |
| KAK2181810.1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
| KAK2181811.1 | BRISC AND BRCA1-A COMPLEX MEMBER 2 |
| KAK2181812.1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
| KAK2181813.1 | AP COMPLEX SUBUNIT MU |
