Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2193096.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| KAK2193097.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| KAK2193098.1 | |
| KAK2193099.1 | |
| KAK2193100.1 | |
| KAK2193101.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| KAK2193102.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| KAK2193103.1 | |
| KAK2193104.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2193105.1 | |
| KAK2193106.1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
| KAK2193107.1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
| KAK2193108.1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
| KAK2193109.1 | - |
| KAK2193110.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2193111.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2193112.1 | |
| KAK2193113.1 | |
| KAK2193114.1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| KAK2193115.1 | |
| KAK2193116.1 | REVERSE TRANSCRIPTASES |
| KAK2193117.1 | |
| KAK2193118.1 | |
| KAK2193119.1 | |
| KAK2193120.1 | |
| KAK2193121.1 | - |
| KAK2193122.1 | |
| KAK2193123.1 | FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1 |
| KAK2193124.1 | |
| KAK2193125.1 | |
| KAK2193126.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| KAK2193127.1 | |
| KAK2193128.1 | |
| KAK2193129.1 | ENGULFMENT AND CELL MOTILITY |
| KAK2193130.1 | CHAPERONIN |
| KAK2193131.1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| KAK2193132.1 | ATP-DEPENDENT RNA HELICASE |
| KAK2193133.1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| KAK2193134.1 | |
| KAK2192999.1 | |
| KAK2193000.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| KAK2193001.1 | TOL-PAL SYSTEM PROTEIN TOLA |
| KAK2193002.1 | REVERSE TRANSCRIPTASES |
| KAK2193003.1 | |
| KAK2193004.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| KAK2193005.1 | RETINOL DEHYDROGENASE |
| KAK2193006.1 | TRANSCRIPTION FACTOR MAF |
| KAK2193007.1 | CCCH ZINGC FINGER |
| KAK2193008.1 | |
| KAK2193009.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR |
