Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2184032.1 | CYTOCHROME P450 508A4-RELATED |
| KAK2184033.1 | PHOSPHOLIPASE-RELATED |
| KAK2184034.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2184035.1 | - |
| KAK2184036.1 | UNCHARACTERIZED |
| KAK2184037.1 | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE |
| KAK2184038.1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| KAK2184039.1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| KAK2184040.1 | |
| KAK2184041.1 | MYOSIN |
| KAK2184042.1 | MYOSIN |
| KAK2184043.1 | MYOSIN |
| KAK2184044.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| KAK2184045.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| KAK2184046.1 | SIGNAL PEPTIDE PEPTIDASE |
| KAK2184047.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2184003.1 | MEMBRANE-ANCHORED JUNCTION PROTEIN MAJIN |
| KAK2184004.1 | |
| KAK2184005.1 | ZINC FINGER PROTEIN |
| KAK2184006.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| KAK2184007.1 | POLYCOMB GROUP PROTEIN |
| KAK2184008.1 | GLR0591 PROTEIN |
| KAK2184009.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| KAK2184010.1 | PROTEIN PHOSPHATASE |
| KAK2184011.1 | COPINE |
| KAK2184012.1 | GEO11419P1 |
| KAK2184013.1 | GEO11419P1 |
| KAK2184014.1 | GEO11419P1 |
| KAK2184015.1 | COPINE |
| KAK2184016.1 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
| KAK2184017.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| KAK2184018.1 | |
| KAK2184019.1 | |
| KAK2184020.1 | |
| KAK2184021.1 | |
| KAK2184022.1 | ZINC FINGER PROTEIN |
| KAK2184023.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| KAK2184024.1 | |
| KAK2184025.1 | |
| KAK2184026.1 | ANOCTAMIN |
| KAK2184027.1 | DDB1- AND CUL4-ASSOCIATED FACTOR 11 |
| KAK2184028.1 | HISTONE H3 |
| KAK2183990.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| KAK2183991.1 | - |
| KAK2183992.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| KAK2183993.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| KAK2183994.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2183995.1 | POLYCYSTIN FAMILY MEMBER |
| KAK2183996.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| KAK2183997.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
