Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 1,780-2,227 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| Gene ID | Description |
|---|---|
| KAK2184711.1 | ATP-DEPENDENT RNA HELICASE |
| KAK2184712.1 | ATP-DEPENDENT RNA HELICASE |
| KAK2184713.1 | |
| KAK2184714.1 | NETRIN/LAMININ-RELATED |
| KAK2184715.1 | NETRIN/LAMININ-RELATED |
| KAK2184716.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2184717.1 | |
| KAK2184661.1 | |
| KAK2184662.1 | |
| KAK2184663.1 | |
| KAK2184664.1 | |
| KAK2184665.1 | |
| KAK2184666.1 | |
| KAK2184667.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| KAK2184668.1 | UNCHARACTERIZED |
| KAK2184669.1 | |
| KAK2184670.1 | |
| KAK2184671.1 | |
| KAK2184672.1 | UNCHARACTERIZED |
| KAK2184673.1 | |
| KAK2184674.1 | |
| KAK2184675.1 | WD40 REPEAT PROTEIN 12, 37 |
| KAK2184676.1 | |
| KAK2184677.1 | |
| KAK2184678.1 | |
| KAK2184679.1 | |
| KAK2184680.1 | |
| KAK2184681.1 | SERINE/THREONINE-PROTEIN KINASE TAO |
| KAK2184682.1 | SERINE INCORPORATOR |
| KAK2184683.1 | |
| KAK2184684.1 | UNCHARACTERIZED |
| KAK2184685.1 | KELCH DOMAIN-CONTAINING PROTEIN 9 |
| KAK2184686.1 | BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE |
| KAK2184687.1 | |
| KAK2184631.1 | |
| KAK2184632.1 | |
| KAK2184633.1 | METALLOPHOSPHOESTERASE |
| KAK2184634.1 | PORCUPINE |
| KAK2184635.1 | 60S RIBOSOMAL PROTEIN L7 |
| KAK2184636.1 | |
| KAK2184637.1 | |
| KAK2184638.1 | EG:80H7.2 PROTEIN |
| KAK2184639.1 | - |
| KAK2184640.1 | - |
| KAK2184641.1 | NOTCH LIGAND FAMILY MEMBER |
| KAK2184642.1 | ORMDL PROTEINS |
| KAK2184643.1 | MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER |
| KAK2184644.1 | ORGANIC ANION TRANSPORTER |
| KAK2184645.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
| KAK2184646.1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
