About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG08296.1-
RPACG08297.1-
RPACG08298.1
RPACG08298.2
RPACG08298.3
RPACG08299.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG08300.1
RPACG08301.1
RPACG08302.1BRCA1-ASSOCIATED PROTEIN
RPACG08303.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG08304.1
RPACG08304.2
RPACG08304.3
RPACG08304.4
RPACG08304.5
RPACG08305.1
RPACG08306.1
RPACG08307.1
RPACG08308.1
RPACG08309.1
RPACG08310.1
RPACG08311.1TNF RECEPTOR ASSOCIATED FACTOR
RPACG08312.1
RPACG08313.1CHAPERONIN
RPACG08314.1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
RPACG08315.1PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12
RPACG08316.1GH02722P
RPACG08317.1T COMPLEX PROTEIN 10
RPACG08318.1
RPACG08319.1
RPACG08320.1
RPACG08321.1SYNTAXIN
RPACG08322.1RAN GTPASE
RPACG08323.1DNAJ HOMOLOG SUBFAMILY C MEMBER 30, MITOCHONDRIAL
RPACG08323.2
RPACG08324.1METHYLTRANSFERASE-RELATED
RPACG08325.1ZINC FINGER PROTEIN
RPACG08326.1
RPACG08327.1
RPACG08328.1TRANSGELIN
RPACG08329.1
RPACG08330.1
RPACG08331.1
RPACG08332.1
RPACG08332.2
RPACG08332.3
RPACG08332.4
RPACG08332.5
RPACG08333.1CORONIN
RPACG08333.2CORONIN
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