About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036679-T1VIMENTIN-TYPE INTERMEDIATE FILAMENT-ASSOCIATED COILED-COIL PROTEIN
OS493_036680-T1RNA POLYMERASE-ASSOCIATED PROTEIN CTR9
OS493_036681-T1-
OS493_036683-T1CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
OS493_036684-T1-
OS493_036685-T1-
OS493_036686-T1TETRASPANIN
OS493_036688-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25
OS493_036689-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25
OS493_036690-T1-
OS493_036691-T1BETA-TUBULIN COFACTOR D
OS493_036692-T1PROTEIN DIAPHANOUS
OS493_036693-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_036694-T1-
OS493_036695-T1FORMIN HOMOLOGY 2 FAMILY MEMBER
OS493_036696-T1-
OS493_036697-T1ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
OS493_036698-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_036699-T1ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
OS493_036700-T1-
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