Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)
Madrepora pertusa Linnaeus, 1758
1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)
Nova Scotia south to New Jersey. Depth range 39-2775 m
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
---|---|---|---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90 | 1,600/438.6 | 39.4 | 57.37 | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_035430-T1 | - |
OS493_035431-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
OS493_035432-T1 | ZINC FINGER C4H2 DOMAIN-CONTAINING PROTEIN |
OS493_035434-T1 | UNCHARACTERIZED |
OS493_035435-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_035436-T1 | SPLICING FACTOR 3B SUBUNIT 4 |
OS493_035437-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_035438-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_035439-T1 | - |
OS493_035440-T1 | INTELECTIN |
OS493_035442-T1 | CELL DIVISION PROTEIN KINASE |
OS493_035443-T1 | POLY A POLYMERASE CID PAP -RELATED |
OS493_035444-T1 | UNCHARACTERIZED |
OS493_035445-T1 | - |
OS493_035446-T1 | RNF121 PROTEIN |
OS493_035447-T1 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
OS493_035448-T1 | - |
OS493_035449-T1 | MALATE SYNTHASE |
OS493_035450-T1 | MALATE SYNTHASE |
OS493_035451-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |