About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034510-T1TUBULIN
OS493_034511-T1NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN
OS493_034512-T1-
OS493_034513-T1-
OS493_034515-T1NONSYNDROMIC HEARING IMPAIRMENT PROTEIN
OS493_034516-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
OS493_034517-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
OS493_034518-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
OS493_034519-T1PROTEIN TAS
OS493_034520-T1-
OS493_034521-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_034523-T1IMPORTIN BETA
OS493_034524-T1SOLUTE CARRIER FAMILY 35
OS493_034525-T1-
OS493_034526-T1FI19480P1
OS493_034529-T1JUN TRANSCRIPTION FACTOR-RELATED
OS493_034530-T1-
OS493_034531-T1FRIZZLED
OS493_034532-T1FRIZZLED
OS493_034533-T1FRIZZLED
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