About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033812-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_033813-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_033814-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_033815-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_033816-T1-
OS493_033817-T1RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2
OS493_033818-T1E3 UBIQUITIN-PROTEIN LIGASE ATL42
OS493_033819-T1-
OS493_033820-T1EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
OS493_033821-T1TYROSINE-PROTEIN PHOSPHATASE
OS493_033822-T1FIDIPIDINE
OS493_033823-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_033824-T1CARBONYL REDUCTASE 1-RELATED
OS493_033825-T1UPF0565 PROTEIN C2ORF69
OS493_033826-T1NEUROLIGIN
OS493_033827-T1NEUROLIGIN
OS493_033828-T1-
OS493_033829-T1-
OS493_033830-T1-
OS493_033831-T1SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
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