About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033541-T1PLEXUS, ISOFORM A
OS493_033542-T1GENETIC SUPPRESSOR ELEMENT 1
OS493_033543-T1DNA REPLICATION COMPLEX GINS PROTEIN PSF2
OS493_033544-T1DNA REPLICATION COMPLEX GINS PROTEIN PSF2
OS493_033545-T1VACUOLAR ATP SYNTHASE SUBUNIT AC39
OS493_033546-T1-
OS493_033547-T1AAA DOMAIN-CONTAINING
OS493_033548-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
OS493_033549-T1-
OS493_033550-T1CALCIUM-TRANSPORTING ATPASE
OS493_033551-T1RIKEN CDNA 6820408C15
OS493_033552-T1RIKEN CDNA 6820408C15
OS493_033553-T1-
OS493_033554-T1CYTOCHROME C OXIDASE SUBUNIT IV
OS493_033555-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
OS493_033556-T1NACHT DOMAIN-CONTAINING PROTEIN
OS493_033557-T1PROTEIN CBG05131
OS493_033558-T1INTELECTIN
OS493_033559-T1INTELECTIN
OS493_033560-T1INTELECTIN
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