About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS00701TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9
HS00702POTASSIUM CHANNEL, SUBFAMILY K
HS00703COLLAGEN ALPHA
HS00704COLLAGEN ALPHA
HS00705REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00706REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00707
HS00708UNCHARACTERIZED
HS00709EXPRESSED PROTEIN
HS00710RNA-BINDING PROTEIN RELATED
HS00711REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00712REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00713REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00714ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
HS00715ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
HS00716ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
HS00717ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS00718ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
HS00719TELOMERASE REVERSE TRANSCRIPTASE
HS00720SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS00721ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4
HS00722CHITIN SYNTHASE
HS00723CHITIN SYNTHASE
HS00724CHEMOTACTIC RECEPTOR
HS00725POLYCOMB GROUP PROTEIN
HS00726
HS00727REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00728SOLUTE CARRIER FAMILY 2
HS00729
HS00730VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT-RELATED
HS00731VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS00732REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00733REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00734
HS00735
HS00736VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
HS00737
HS00738
HS00739IONOTROPIC GLUTAMATE RECEPTOR
HS00740REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS00741
HS00742
HS00743THYROTROPH EMBRYONIC FACTOR RELATED
HS00744ZINC FINGER PROTEIN
HS00745PROTEIN SHISA-9-RELATED
HS00746EPSIN/ENT-RELATED
HS00747CCR4 NOT-RELATED
HS00748COILED-COIL DOMAIN-CONTAINING PROTEIN 106
HS00749SI:CH211-232M10.4-RELATED
HS00750
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