About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_032054-T1TRANSCRIPTION FACTOR 7 FAMILY MEMBER
OS493_032055-T1-
OS493_032056-T1SKP1
OS493_032057-T1TRANSCRIPTION FACTOR MAF
OS493_032058-T1PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED
OS493_032059-T114-3-3 PROTEIN
OS493_032060-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
OS493_032061-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
OS493_032062-T1-
OS493_032063-T1CYTOSOLIC CARBOXYPEPTIDASE
OS493_032064-T1-
OS493_032065-T1PROTEIN LKAAEAR1
OS493_032066-T1U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN
OS493_032067-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_032068-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_032069-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_032070-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_032071-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_032072-T1-
OS493_032073-T1-
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