About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030092-T1-
OS493_030093-T1EXONUCLEASE V
OS493_030094-T1TRPL TRANSLOCATION DEFECT PROTEIN 14
OS493_030095-T1ARP2/3 COMPLEX 21 KD SUBUNIT
OS493_030096-T1UNCHARACTERIZED
OS493_030098-T1BCL7 RELATED
OS493_030099-T1-
OS493_030100-T1REPLICATION FACTOR A 1, RFA1
OS493_030101-T1UNCHARACTERIZED
OS493_030102-T1CRUMBS FAMILY MEMBER
OS493_030103-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_030104-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
OS493_030105-T1F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED
OS493_030106-T1OLIGOPEPTIDE TRANSPORTER-RELATED
OS493_030107-T1-
OS493_030108-T1-
OS493_030109-T1ACETOACETYL-COA SYNTHETASE
OS493_030110-T1NITRILASE C965.09-RELATED
OS493_030111-T1STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15
OS493_030112-T1RAN GTPASE
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