About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029548-T1BETA-ALANINE-ACTIVATING ENZYME
OS493_029549-T1MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23
OS493_029550-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_029551-T1-
OS493_029552-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
OS493_029553-T1LEUCOKININ RECEPTOR-RELATED
OS493_029554-T1-
OS493_029555-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029556-T1ATP-BINDING TRANSPORT PROTEIN-RELATED
OS493_029557-T1CGI-12 PROTEIN-RELATED
OS493_029558-T160S RIBOSOMAL PROTEIN L21
OS493_029559-T1PRESEQUENCE TRANSLOCATED-ASSOCIATED MOTOR SUBUNIT PAM17, MITOCHONDRIAL
OS493_029560-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_029561-T1-
OS493_029562-T1-
OS493_029563-T1-
OS493_029564-T1MYOTUBULARIN-RELATED
OS493_029565-T1NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1
OS493_029571-T1-
OS493_029572-T1-
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