About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8024491.1DISULFIDE OXIDOREDUCTASE
CAI8024492.1TAIL-SPECIFIC PROTEASE
CAI8024493.1TETRAACYLDISACCHARIDE 4'-KINASE
CAI8024494.1LIPID-A-DISACCHARIDE SYNTHASE
CAI8024495.1-
CAI8024496.1PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED
CAI8024497.1-
CAI8024499.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8024498.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8024500.1POLYKETIDE CYCLASE SNOAL-LIKE DOMAIN
CAI8024501.1DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED
CAI8024502.12-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE
CAI8024503.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8024504.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8024505.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8024506.1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21
CAI8024507.1-
CAI8024508.1TRANSAMINASE
CAI8024509.1SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA
CAI8024510.1D-GALACTONATE DEHYDRATASE-RELATED
TOP