About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2187622.1CHONDROLECTIN VARIANT CHODLFDELTAE.
KAK2187623.1UPF0183 PROTEIN
KAK2187624.1
KAK2187625.1CORE-BINDING FACTOR, BETA SUBUNIT
KAK2187626.1
KAK2187627.1KATANIN P80 SUBUNIT
KAK2187628.1CHARGED MULTIVESICULAR BODY PROTEIN
KAK2187629.1TUBULIN
KAK2187630.1OS01G0282866 PROTEIN
KAK2187631.1TUBULIN
KAK2187632.1TUBULIN
KAK2187633.1TUBULIN
KAK2187634.1PROTEASOME ASSEMBLY CHAPERONE 4
KAK2187635.1ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL
KAK2187636.1PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN
KAK2187637.1ALPHA-L-IDURONIDASE
KAK2187638.1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
KAK2187639.1
KAK2187640.1UNCHARACTERIZED
KAK2187641.1S-FORMYLGLUTATHIONE HYDROLASE
KAK2187642.1APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS
KAK2187643.1CENTROSOMAL PROTEIN OF 89 KDA
KAK2187644.1GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN
KAK2187645.1NADH-UBIQUINONE OXIDOREDUCTASE SGDH SUBUNIT
KAK2187646.1SPERM ASSOCIATED ANTIGEN 7
KAK2187596.1BAX INHIBITOR-RELATED
KAK2187597.1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
KAK2187598.1GUANYLYL CYCLASE
KAK2187599.1GUANYLYL CYCLASE
KAK2187600.1VWFC DOMAIN-CONTAINING PROTEIN
KAK2187601.1
KAK2187602.1DNA POLYMERASE DELTA SUBUNIT 3
KAK2187603.1
KAK2187604.1
KAK2187605.1G-PROTEIN COUPLED RECEPTOR
KAK2187606.1
KAK2187607.1ATP-BINDING CASSETTE SUB-FAMILY C
KAK2187608.1
KAK2187609.1ATP-BINDING CASSETTE SUB-FAMILY C
KAK2187610.1PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED
KAK2187611.1THIOSULFATE SULFERTANSFERASE
KAK2187612.1MITOCHONDRIAL GLYCINE TRANSPORTER
KAK2187613.1AMINO ACID TRANSPORTER
KAK2187614.1UNCHARACTERIZED
KAK2187615.1-
KAK2187616.1
KAK2187617.1
KAK2187618.1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
KAK2187619.1ALPHA-MANNOSIDASE
KAK2187563.1ORF PROTEIN-RELATED
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