Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
Title | Journal | Pubmed ID |
---|---|---|
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
Gene ID | Description |
---|---|
KAK2187622.1 | CHONDROLECTIN VARIANT CHODLFDELTAE. |
KAK2187623.1 | UPF0183 PROTEIN |
KAK2187624.1 | |
KAK2187625.1 | CORE-BINDING FACTOR, BETA SUBUNIT |
KAK2187626.1 | |
KAK2187627.1 | KATANIN P80 SUBUNIT |
KAK2187628.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
KAK2187629.1 | TUBULIN |
KAK2187630.1 | OS01G0282866 PROTEIN |
KAK2187631.1 | TUBULIN |
KAK2187632.1 | TUBULIN |
KAK2187633.1 | TUBULIN |
KAK2187634.1 | PROTEASOME ASSEMBLY CHAPERONE 4 |
KAK2187635.1 | ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL |
KAK2187636.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
KAK2187637.1 | ALPHA-L-IDURONIDASE |
KAK2187638.1 | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN |
KAK2187639.1 | |
KAK2187640.1 | UNCHARACTERIZED |
KAK2187641.1 | S-FORMYLGLUTATHIONE HYDROLASE |
KAK2187642.1 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS |
KAK2187643.1 | CENTROSOMAL PROTEIN OF 89 KDA |
KAK2187644.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
KAK2187645.1 | NADH-UBIQUINONE OXIDOREDUCTASE SGDH SUBUNIT |
KAK2187646.1 | SPERM ASSOCIATED ANTIGEN 7 |
KAK2187596.1 | BAX INHIBITOR-RELATED |
KAK2187597.1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
KAK2187598.1 | GUANYLYL CYCLASE |
KAK2187599.1 | GUANYLYL CYCLASE |
KAK2187600.1 | VWFC DOMAIN-CONTAINING PROTEIN |
KAK2187601.1 | |
KAK2187602.1 | DNA POLYMERASE DELTA SUBUNIT 3 |
KAK2187603.1 | |
KAK2187604.1 | |
KAK2187605.1 | G-PROTEIN COUPLED RECEPTOR |
KAK2187606.1 | |
KAK2187607.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
KAK2187608.1 | |
KAK2187609.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
KAK2187610.1 | PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED |
KAK2187611.1 | THIOSULFATE SULFERTANSFERASE |
KAK2187612.1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
KAK2187613.1 | AMINO ACID TRANSPORTER |
KAK2187614.1 | UNCHARACTERIZED |
KAK2187615.1 | - |
KAK2187616.1 | |
KAK2187617.1 | |
KAK2187618.1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
KAK2187619.1 | ALPHA-MANNOSIDASE |
KAK2187563.1 | ORF PROTEIN-RELATED |