About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028029-T1-
OS493_028030-T1-
OS493_028031-T1-
OS493_028032-T1LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN
OS493_028033-T1-
OS493_028034-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH4-LIKE
OS493_028036-T150S/60S RIBOSOMAL PROTEIN L14/L23
OS493_028037-T1SH3 DOMAIN-BINDING PROTEIN 5
OS493_028038-T1GH11358P
OS493_028039-T1SPARC OSTEONECTIN
OS493_028040-T1TETRATRICOPEPTIDE REPEAT PROTEIN 19
OS493_028041-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_028042-T1INTEGRIN ALPHA
OS493_028043-T1INTEGRIN ALPHA
OS493_028044-T1WD40 REPEAT PF20
OS493_028045-T1BETA TRANSDUCIN-RELATED PROTEIN
OS493_028046-T1BETA TRANSDUCIN-RELATED PROTEIN
OS493_028047-T1BETA TRANSDUCIN-RELATED PROTEIN
OS493_028048-T1-
OS493_028049-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
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