About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8023371.1FES CLUSTER ASSEMBLY PROTEIN SUF
CAI8023372.1ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC
CAI8023373.1PROTEIN ABCI7, CHLOROPLASTIC
CAI8023374.1CYSTEINE DESULFURASE
CAI8023375.1IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
CAI8023376.1CTP SYNTHASE
CAI8023377.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8023378.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8023379.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8023380.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8023381.1DNA PRIMASE
CAI8023382.1RNA POLYMERASE SIGMA FACTOR RPO
CAI8023383.1-
CAI8023384.1NUCLEOTIDYL TRANSFERASE
CAI8023386.1TRANSAMIDASE
CAI8023385.1TRANSAMIDASE
CAI8023387.1TRANSAMIDASE
CAI8023388.1ACETYL-COA C-ACETYLTRANSFERASE
CAI8023389.1BLR3430 PROTEIN
CAI8023390.1METHYLMALONYL-COA EPIMERASE
TOP