About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)

Original Name

Riftia pachyptila Jones, 1981

Key Reference Paper

1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)

Distribution

Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504799.37 287040.4929.9937,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG22943.1-
RPACG22944.1TYROSINE-PROTEIN KINASE
RPACG22945.1MUCIN-2
RPACG22946.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG22947.1PROTEIN C10
RPACG22948.1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
RPACG22949.1SERYL-TRNA SYNTHETASE
RPACG22950.1CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT BETA
RPACG22951.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
RPACG22951.2-
RPACG22952.1-
RPACG22953.1-
RPACG22954.1GPI-ANCHOR TRANSAMIDASE
RPACG22955.1NUCLEOTIDE KINASE
RPACG22956.1NUCLEOTIDE KINASE
RPACG22957.1BONUS, ISOFORM C-RELATED
RPACG22958.1DIMETHYLARGININE DIMETHYLAMINOHYDROLASE
RPACG22959.1SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52
RPACG22960.1SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52
RPACG22961.130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18
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