About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG05629.1CLARIN
RPACG05630.1
RPACG05631.1
RPACG05632.1
RPACG05633.1GH10160P
RPACG05634.1
RPACG05635.1PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR
RPACG05636.1PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED
RPACG05637.1OS12G0117600 PROTEIN
RPACG05638.1
RPACG05639.1IONOTROPIC RECEPTOR 20A-RELATED
RPACG05639.2
RPACG05640.1IONOTROPIC RECEPTOR 20A-RELATED
RPACG05640.2
RPACG05641.1
RPACG05642.1MSF1/PX19 RELATED
RPACG05643.1DNA POLYMERASE I
RPACG05643.2
RPACG05644.1NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
RPACG05645.1NOP14
RPACG05646.1
RPACG05647.1
RPACG05648.1
RPACG05649.1
RPACG05650.1MICROTUBULE-ASSOCIATED PROTEIN 9
RPACG05651.1
RPACG05652.1
RPACG05652.2
RPACG05653.1
RPACG05654.1ZINC FINGER PROTEIN 142
RPACG05654.2
RPACG05654.3
RPACG05655.1RING ZINC FINGER PROTEIN
RPACG05656.1INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED
RPACG05656.2
RPACG05656.3
RPACG05656.4
RPACG05657.1CELL SURFACE A33 ANTIGEN
RPACG05658.1
RPACG05658.2
RPACG05659.1PROTEIN CBG18546
RPACG05660.1
RPACG05661.1
RPACG05661.2
RPACG05662.1
RPACG05662.2
RPACG05663.1
RPACG05664.1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG05665.1MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
RPACG05666.1
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