Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG22769.1 | S-LAYER PROTEIN |
| RPACG22770.1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
| RPACG22771.1 | ENDOSOME-ASSOCIATED TRAFFICKING REGULATOR 1 |
| RPACG22772.1 | TYROSINE AMINOTRANSFERASE |
| RPACG22773.1 | TYROSINE AMINOTRANSFERASE |
| RPACG22774.1 | - |
| RPACG22775.1 | SPERM ASSOCIATED ANTIGEN 7 |
| RPACG22776.1 | NADH-UBIQUINONE OXIDOREDUCTASE SGDH SUBUNIT |
| RPACG22777.1 | MUCIN 12EA-RELATED |
| RPACG22778.1 | - |
| RPACG22779.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| RPACG22780.1 | CENTROSOMAL PROTEIN OF 89 KDA |
| RPACG22781.1 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS |
| RPACG22781.2 | - |
| RPACG22782.1 | S-FORMYLGLUTATHIONE HYDROLASE |
| RPACG22783.1 | UNCHARACTERIZED |
| RPACG22784.1 | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN |
| RPACG22785.1 | - |
| RPACG22786.1 | - |
| RPACG22787.1 | - |
