About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8022631.160 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL
CAI8022632.160 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL
CAI8022633.1-
CAI8022634.1HEXOKINASE FAMILY MEMBER
CAI8022635.1RNA POLYMERASE ECF-TYPE SIGMA FACTO
CAI8022636.1-
CAI8022637.1TRANSAMIDASE
CAI8022638.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8022639.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8022640.1MICROSOMAL DIPEPTIDASE
CAI8022641.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI8022642.1ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED
CAI8022643.1-
CAI8022644.1ANTI-SIGMA-F FACTOR RSBW-RELATED
CAI8022645.1STAGE II SPORULATION PROTEIN E-RELATED
CAI8022646.1TWO-COMPONENT HISTIDINE PROTEIN KINASE
CAI8022647.1TRANSPOSASE
CAI8022648.1CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
CAI8022649.1HEAT SHOCK PROTEIN 70KDA
CAI8022651.1DNA POLYMERASE I
TOP