About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026398-T1ACTIN
OS493_026399-T1SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
OS493_026400-T1LAMGL DOMAIN-CONTAINING PROTEIN
OS493_026401-T1LAMGL DOMAIN-CONTAINING PROTEIN
OS493_026402-T1GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
OS493_026403-T1SCY1-RELATED S/T PROTEIN KINASE-LIKE
OS493_026404-T1-
OS493_026405-T1SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO
OS493_026406-T1-
OS493_026407-T1RIBOSOMAL PROTEIN L5-RELATED
OS493_026408-T1DED DOMAIN-CONTAINING PROTEIN
OS493_026409-T1DIMETHYLANILINE MONOOXYGENASE
OS493_026410-T1-
OS493_026413-T1DIMETHYLANILINE MONOOXYGENASE
OS493_026414-T1DIMETHYLANILINE MONOOXYGENASE
OS493_026415-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_026416-T1DYNACTIN 1-RELATED MICROTUBULE-BINDING
OS493_026417-T1ANKYRIN REPEAT PROTEIN
OS493_026418-T1-
OS493_026419-T1-
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