Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG21676.1 | SIMILAR TO HYPOTHETICAL PROTEIN MGC34837 |
| RPACG21677.1 | RAN BINDING PROTEIN |
| RPACG21678.1 | RIBULOKINASE |
| RPACG21679.1 | RAS-RELATED PROTEIN RAB |
| RPACG21680.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| RPACG21681.1 | SPHINGOMYELINASE FAMILY MEMBER |
| RPACG21682.1 | RABIN3-RELATED |
| RPACG21683.1 | RABIN3-RELATED |
| RPACG21684.1 | BLR2807 PROTEIN |
| RPACG21685.1 | PEPTIDASE M20 |
| RPACG21685.2 | - |
| RPACG21686.1 | PEPTIDASE M20 |
| RPACG21687.1 | PEPTIDASE M20 |
| RPACG21688.1 | PEPTIDASE M20 |
| RPACG21689.1 | UNCHARACTERIZED |
| RPACG21690.1 | NEUROGENIC PROTEIN MASTERMIND |
| RPACG21691.1 | - |
| RPACG21692.1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| RPACG21693.1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| RPACG21694.1 | DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER |
