About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2170506.1-
KAK2170507.1DYNEIN LIGHT CHAIN ROADBLOCK
KAK2170488.1MULTIPLE PDZ DOMAIN PROTEIN
KAK2170489.1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
KAK2170490.1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
KAK2170491.1PHOSPHOMANNOMUTASE 45A
KAK2170492.1PHOSPHOMANNOMUTASE 45A
KAK2170493.1NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
KAK2170474.1SOLUTE CARRIER FAMILY 39
KAK2170475.1DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
KAK2170476.1HISTONE H2A
KAK2170477.1BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2
KAK2170478.1-
KAK2170479.1E3 UBIQUITIN-PROTEIN LIGASE PRAJA
KAK2170480.1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
KAK2170481.1INOSITOL POLYPHOSPHATE KINASE
KAK2170482.1DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL
KAK2170483.1GUANYLYL CYCLASE
KAK2170484.1CXC DOMAIN-CONTAINING PROTEIN-RELATED
KAK2170485.1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
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