About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024731-T1-
OS493_024732-T1INTEGRATOR COMPLEX SUBUNIT 5
OS493_024734-T1MITOGUARDIN
OS493_024735-T1LD11652P
OS493_024736-T1BIFUNCTIONAL TH2 PROTEIN
OS493_024737-T1G-PROTEIN COUPLED RECEPTOR
OS493_024738-T1-
OS493_024739-T1-
OS493_024740-T1MULTI-COPPER OXIDASE
OS493_024741-T1UPF0690 PROTEIN C1ORF52
OS493_024742-T1TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER
OS493_024743-T1QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1
OS493_024744-T1GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5
OS493_024745-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_024746-T1TETRATRICOPEPTIDE REPEAT PROTEIN 16
OS493_024747-T1-
OS493_024748-T1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
OS493_024749-T1UNCHARACTERIZED
OS493_024750-T1UNCHARACTERIZED
OS493_024751-T1CT120 PROTEIN
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